Publications

2020
  • Morin, S., Coquillé, N., Éon, M., Budzinski, H., Parlanti, E., Stachowski-Haberkorn, S. (2021). Dissolved organic matter modulates the impact of herbicides on a freshwater alga: A laboratory study of a three-way interaction. Science of The Total Environment Vol. 782 (2021). Publisher's official version
  • Boukerb Amine, M., Schaeffer, J., Serghine, J., Carrier, G., Le Guyader, S., Gourmelon, M. (2020). Complete Genome Sequence of Campylobacter armoricus CA639, Which Carries Two Plasmids, Compiled Using Oxford Nanopore and Illumina Sequencing Technologies. Microbiology Resource Announcements, 9(1), e01309-19 (3p.). Publisher's official version , Correction February 13 2020. Open Access version
  • Gastineau, R., Lemieux, C., Turmel , M., Grypioti , E., Verret , F.,  Makris , A., Argiriou , A., Kafetzopoulos , D., Stratidaki , I., Carrier , G., Jacquette, B. and Mouget, J.L. (2020). Two new bacilladnaviruses associated with the diatom Haslea ostrearia. European Journal of Phycology. Publisher's official version
  • Gaillard, S., Charrier, A., Malo, F., Carpentier, L., Bougaran, G., Hégaret, H., Réveillon, D., Hess, P. and  Séchet, V. Combined Effects of Temperature, Irradiance, and pH on Teleaulax amphioxeia (Cryptophyceae) Physiology and Feeding Ratio For Its Predator Mesodinium rubrum (Ciliophora)1. Journal of Phycology. Publisher's official version
  • Rumin, J., Nicolau, E., Gonçalves De Oliveira Junior, R., Fuentes-Grünewald, C., Flynn, K.J and Picot, L. (2020). A Bibliometric Analysis of Microalgae Research in the World, Europe, and the European Atlantic Area. Marine Drugs , 18(2), 79 (33p.). Publisher's official version , Open Access version
  • Rumin, J., Nicolau, E., Gonçalves De Oliveira Junior, R., Fuentes-Grünewald, C. and  Picot, L. (2020). Analysis of Scientific Research Driving Microalgae Market Opportunities in Europe. Marine Drugs, 18(5), 264 (32p.). Publisher's official version, Open Access version.
  • Huang, B., Mimouni, V., Lukomska, E., Morant-Manceau, A. and Bougaran, G. (2020). Carbon partitioning and lipid remodeling during phosphorus and nitrogen starvation in the marine microalga Diacronema lutheri (Haptophyta). Journal Of Phycology, 56(4), 908-922. Publisher's official version
  • Gonçalves De Oliveira Junior, R., Nicolau, E., Bonnet, A., Prunier, G., Beaugeard, L., Joguet, N., Thiéry, V. and Picot, L. (2020). Carotenoids from Rhodomonas salina Induce Apoptosis and Sensitize A2058 Melanoma Cells to Chemotherapy. Revista Brasileira De Farmacognosia-brazilian Journal Of Pharmacognosy, 30(2), 155-168. Publisher's official version, Open Access version.
  • Nef, C., Henry, C., Nicolau, E., Bérard, J.-B., Hervé, F., Caruana, A., Kaas, R., Mairet, F. and Garnier, M. (2020). Cobalamin Scarcity Modifies Carbon Allocation and Impairs DMSP Production Through Methionine Metabolism in the Haptophyte Microalgae Tisochrysis lutea. Frontiers In Marine Science, 7, 569660 (17p.). Publisher's official version, Open Access version.
  • Martinez, C., Mairet, F. and Bernard, O. (2020). Dynamics of the periodically forced light-limited Droop model. Journal Of Differential Equations, 269(4), 3890-3913. Publisher's official version.
  • Massicotte, P., Amiraux, R., Amyot, M.-P., Lacour T. et al. (2020). Green Edge ice camp campaigns: understanding the processes controlling the under-ice Arctic phytoplankton spring bloom. Earth System Science Data, 12(1), 151-176. Publisher's official version, Open Access version.
  • Coulombier, N., Nicolau, E.,Le Déan, L., Antheaume, C., Jauffrais, T. and Lebouvier N. (2020). Impact of Light Intensity on Antioxidant Activity of Tropical Microalgae. Marine Drugs, 18(2), 122 (18p.). Publisher's official version, Open Access version.
  • Martinez, C., Ávila, A., Mairet, F., Meier, L. and Jeison, D. (2020). Modeling and Analysis of an Absorption Column Connected to a Microalgae Culture. Siam Journal On Applied Mathematics, 80(2), 772-791. Publisher's official version, Open Access version.
  • Gonçalves De Oliveira-Júnior, R., Grougnet, R., Bodet, P.-E., Bonnet, A., Nicolau, E., Jebali, A., Rumin and J., Picot, L. (2020). Updated pigment composition of Tisochrysis lutea and purification of fucoxanthin using centrifugal partition chromatography coupled to flash chromatography for the chemosensitization of melanoma cells. Algal Research-biomass Biofuels And Bioproducts, 51, 102035 (13p.). Publisher's official version.
  • Gachelin, M., Boutoute, M., Carrier, G., Talec, A., Pruvost, E., Guihéneuf, F., Bernard, O. and Sciandra, A. (2021). Enhancing PUFA-rich polar lipids in Tisochrysis lutea using adaptive laboratory evolution (ALE) with oscillating thermal stress. Applied Microbiology and Biotechnology, 105, 301–312. Publisher's official version.  
  • Mairet, F., Bayen, T. (2021). The promise of dawn: microalgae photoacclimation as an optimal control problem of resource allocation. Journal of Theoretical Biology, 515, 110597 (12p.). Publisher's official version.

2019

  • Cointet, E., Wielgosz-Collin, G., Bougaran, G., Rabesaotra, V., Gonçalves, O. and Méléder, V. (2019). Effects of light and nitrogen availability on photosynthetic efficiency and fatty acid content of three original benthic diatom strains. PLoS ONE 14(11): e0224701. Publisher's official version,  Open Access version.
  • Huang, B., Marchand, J., Blanckaert, V., Lukomska, E., Ulmann, L., Wielgosz-Collin, G., Rabesaotra, V., Moreau, B., Bougaran, G., Mimouni, V., Morant-Manceau, A. (2019). Nitrogen and phosphorus limitations induce carbon partitioning and membrane lipid remodelling in the marine diatom Phaeodactylum tricornutum.  European Journal of Phycology,54:3, 342-358.  Publisher's official version
  • Heydarizadeh, P., Veidl, B., Huang, B., Lukomska, E., Wielgosz-Collin, G., Couzinet-Mossion, A., Bougaran, G., Marchand, J. and Schoefs, B. (2019). Carbon orientation in the diatom Phaeodactylum tricornutum: The Effects of carbon limitation and photon flux density front. Plant Sci., 16 April 2019.  Publisher's official version
  • Lacour, T., Babin, M., Lavaud, J. Diversity in xanthophyll cycle pigments content and related non‐photochemical quenching (NPQ) among microalgae: implications for growth strategy and ecology. Journal of Phycology IN PRESS. https://doi.org/10.1111/jpy.12944
  • Morin, P.I., Lacour, T., Grondin, P.L., Bruyant, F., Ferland, J., Forget, M.H., Massicotte, P., Donaher, N., Campbell, D.A., Lavaud, J. and Babin, M. Response of the sea‐ice diatom Fragilariopsis cylindrus to simulated polar night darkness and return to light. Limnology and Oceanography IN PRESS. https://doi.org/10.1002/lno.11368
  • Caruana, A., Ayache, N., Raimbault, V., Retho, M., Herve, F., Bilien, G., Amzil, Z. and Chomerat, N. (2019). Direct evidence for toxin production by Pseudo-nitzschia plurisecta (Bacillariophyceae) and extension of its distribution area. European Journal Of Phycology, 54(4), 585-594. Publisher's official version
  • Huang, B., Marchand, J., Thiriet-Rupert, S., Carrier, G., Saint-Jean, B., Lukomska, E., Moreau, B., Morant-Manceau, A., Bougaran, G. and Mimouni, V. (2019). Betaine lipid and neutral lipid production under nitrogen or phosphorus limitation in the marine microalga Tisochrysis lutea (Haptophyta). Algal Research-biomass Biofuels And Bioproducts, 40, 101506 (15p.). Publisher's official version
  • Yegorov, I., Mairet, F., De Jong, H. and Gouze, J.L. (2019). Optimal control of bacterial growth for the maximization of metabolite production. Journal Of Mathematical Biology, 78(4), 985-1032. Publisher's official version , Open Access version 
  • Massicotte, P., Amiraux, R., Amyot, M.P., Archambault, P., Ardyna, M., Lacour, T., Lafond, A., Lagunas, J., Lalande, C., Laliberte, J., Lambert-Girard, S., Lariviere, J., Lavaud, J., Lebaron, A., Leblanc, K., Le Gall, F., Legras, J., Lemire, M., Levasseur, M., Leymarie, E., Leynaert, A., Lopes Dos Santos, A., Lourenco, A., Mah, D., Marec, C., Marie, D., Martin, N., Marty, C., Marty, S., Masse, G., Matsuoka, A., Matthes, L., Moriceau, B., Muller, P.E., Mundy, C.J., Neukermans, G., Oziel, L., Panagiotopoulos, C., Pangazi, J.J., Picard, G., Picheral, M., Pinczon Du Sel, F., Pogorzelec, N., Probert, I., Queguiner, B., Raimbault, P., Ras, J., Rehm, E., Reimer, E., Rontani, J.F., Rysgaard, S., Saint-Beat, B., Sampei, M., Sansoulet, J. Schmidt, S., Sempere, R., Sevigny, C., Shen, Y., Tragin, M., Tremblay, J.E., Vaulot, D., Verin, G., Vivier, F., Vladoiu, A., Whitehead, J. and Babin, M. (2019). The Green Edge initiative: understanding the processes controlling the under-ice Arctic phytoplankton spring bloom. SEANOE
  • Martinez, C., Mairet, F., Plaza, L., Sciandra, A. and Bernard, O. (2019). Quantifying the potential of microalgae to remove nutrients from wastewater. Ifac Papersonline, 52(26), 287-292. Publisher's official version , Open Access version 
  • Martínez, C., Mairet, F., Martinon, P. and Bernard, O. (2019). Dynamics and control of a periodically forced microalgae culture. Ifac Papersonline, 52(1), 922-927. Publisher's official version
2018
  • Carrier, G., Baroukh, C., Rouxel , C., Duboscq-Bidot, L., Schreiber, N., Bougaran, G. (2018). Draft genomes and phenotypic characterization of Tisochrysis lutea strains. Toward the production of domesticated strains with high added value.Algal Research-biomass Biofuels And Bioproducts, 29, 1-11. Publisher's official version / Open Access version
  • Marchetti, J., Da Costa, F., Bougaran, G., Quere, C., Soudant, P., Robert, R. (2018). The combined effects of blue light and dilution rate on lipid class and fatty acid composition of Tisochrysis lutea. Journal Of Applied Phycology, 30(3), 1483-1494. Publisher's official version / Open Access version 
  • Bechet, Q., Coulombier, N., Vasseur, C., Lasserre, T., Le Dean, L., Bernard, O. (2018). Full-scale validation of an algal productivity model including nitrogen limitation. Algal Research-biomass Biofuels And Bioproducts, 31, 377-386. Publisher's official version
  • Juin, C., De Oliveira Junior, R. G., Fleury, A., Oudinet, C., Pytowski, L., Berard, J.-B., Nicolau, E., Thiery, V., Lanneluc, I., Beaugeard, L., Prunier, G., Guedes Da Silva Almeida, J. R., Picot, L. (2018). Zeaxanthin from Porphyridium purpureum induces apoptosis in human melanoma cells expressing the oncogenic BRAF V600E mutation and sensitizes them to the BRAF inhibitor vemurafenib. Revista Brasileira De Farmacognosia-brazilian Journal Of Pharmacognosy, 28(4), 457-467. Publisher's official version / Open Access version
  • Thiriet-Rupert, S., Carrier, G., Trottier, C., Eveillard D., Schoefs B., Bougaran, G., Cadoret, J.-P., Chenais B., Saint-Jean, B. (2018). Identification of transcription factors involved in the phenotype of a domesticated oleaginous microalgae strain of Tisochrysis lutea. Algal Research-biomass Biofuels And Bioproducts, 30, 59-72. Publisher's official version / Open Access version
  • Berthelier, J., Casse, N., Daccord, N., Jamilloux, V., Saint-Jean, B., Carrier, G. (2018). A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea. Bmc Genomics, 19(1), 378 (14p.). Publisher's official version / Open Access version
  • Aite, M., Chevallier, M., Frioux, C., Trottier, C., Got, J., Paz Cortes, M., Mendoza, S. N., Carrier, G., Dameron, O., Guillaudeux, N., Latorre M., Loira, N., Markov, G. V., Maass, A., Siegel, A. (2018). Traceability, reproducibility and wiki-exploration for "a-la-carte" reconstructions of genome-scale metabolic models. Plos Computational Biology, 14(5), e1006146 (25p.). Publisher's official version / Open Access version
  • Juin, C., De Oliveira Junior, R. G., Fleury, A., Oudinet, C., Pytowski, L., Berard, J.-B., Nicolau, E., Thiery, V., Lanneluc, I., Beaugeard, L., Prunier, G., Guedes Da Silva Almeida, J. R., Picot, L. (2018). Zeaxanthin from Porphyridium purpureum induces apoptosis in human melanoma cells expressing the oncogenic BRAF V600E mutation and sensitizes them to the BRAF inhibitor vemurafenib. Revista Brasileira De Farmacognosia-brazilian Journal Of Pharmacognosy, 28(4), 457-467. Publisher's official version / Open Access version
  • Martínez, C., Mairet, F., & Bernard, O. (2018). Theory of turbid microalgae cultures. Journal of theoretical biology, 456, 190-200.
  • Demory, D., Combe, C., Hartmann, P., Talec, A., Pruvost, E., Hamouda, R., ... & Bernard, O. (2018). How do microalgae perceive light in a high-rate pond? Towards more realistic Lagrangian experiments. Royal Society open science, 5(5), 180523.
  • Mairet, F. (2018). A biomolecular proportional integral controller based on feedback regulations of protein level and activity. Royal Society open science, 5(2), 171966.
  • Lacour, T., Larivière, J., Ferland, J., Bruyant, F., Lavaud, J. & Babin, M. 2018. The Role of Sustained Photoprotective Non-photochemical Quenching in Low Temperature and High Light Acclimation in the Bloom-Forming Arctic Diatom Thalassiosira gravida. Frontiers in Marine Science 5(354).
2017
  • da Costa, F., Le Grand, F., Quéré, Cl., Bougaran, G., Cadoret, J.-P., Robert, R. and Soudant, P. (2017). Effects of growth phase and nitrogen limitation on biochemical composition of two strains of Tisochrysis lutea. Algal Research, 27, 177-189. Publisher's official version
  • Bonnefond, H., Micaelu Grimaud, G., Rumin, J., Bougaran, G., Talec, A. et al. Continuous selection pressure to improve temperature acclimation of Tisochrysis lutea. PLoS ONE, Public Library of Science, 2017. Publisher's official version
  • Ben Amor, F., Elleuch, F., Ben Hlima, H., Garnier, M., Saint-Jean, B., Barkallah, M., Pichon, Ch., Abdelkafi, S. and Fendri, I. (2017). Proteomic Analysis of the Chlorophyta Dunaliella New Strain AL-1 Revealed Global Changes of Metabolism during High Carotenoid Production. Marine Drugs, 15(9), 293 (1-16). Publisher's official version / Open Access version
  • Heydarizadeh, P., Boureba, W., Zahedi, M., Huang, B., Moreau, B., Lukomska, E., Couzinet-Mossion, A. , Wielgosz-Collin, G. , Martin-Jezequel, V. , Bougaran, G. , Marchand, J. and Schoefs, B. (2017). Response of CO2-starved diatom Phaeodactylum tricornutum to light intensity transition. Phil. Trans. R. Soc. B 20160396. Publisher's official version
  • Haguet, Q., Bonnet, A., Bérard, J.B., Goldberg, J., Joguet, N., Fleury, A., Thiéry, V. and Picot, L. (2017). Antimelanoma activity of Heterocapsa triquetra pigments. Algal Research, 25, 207-215. Publisher's official version
  • Serive, B., Nicolau, E., Berard, J.B., Kaas, R., Pasquet, V., Picot, L. and Cadoret, J.P. (2017). Community analysis of pigment patterns from 37 microalgae strains reveals new carotenoids and porphyrins characteristic of distinct strains and taxonomic groups. Plos One, 12(2), e0171872 (1-35). Publisher's official version / Open Access version
  • Thiriet-Rupert, St. (2017). Etude des facteurs de transcription impliqués dans l’accumulation lipidique en condition de stress azoté chez la microalgue haptophyte Isochrysis affinis galbana. PhD Thesis, Université du Maine.
  • Carrier, G., Baroukh, C., Rouxel, C., Duboscq-Bidot, L., Schreiber, N. and Bougaran, G. (2017). Draft genomes of the algae Tisochrysis lutea strains. SEANOE. Publisher's official version
2016
  • Garnier M. (2016). Allocation du carbone et métabolisme azoté chez l'haptophyte Tisochrysis lutea. PhD Thesis, Université de Nantes. Open Access version
  • Da Costa F., Petton, B., Mingant, C., Bougaran, G., Rouxel, C., Quere, C., Wikfors, G. H., Soudant, P. and Robert, R. (2016). Influence of one selected Tisochrysis lutea strain rich in lipids on Crassostrea gigas larval development and biochemical composition. Aquaculture Nutrition, 22(4), 813-836.  Publisher's official version / Open Access version.
  • Garnier, M., Bougaran, G., Pavlovic, M., Berard, J.B., Carrier, G., Charrier, A., Le Grand, F., Lukomska, E., Rouxel, C., Schreiber, N., Cadoret, J.P., Rogniaux, H., Saint-Jean, B. (2016). Use of a lipid rich strain reveals mechanisms of nitrogen limitation and carbon partitioning in the haptophyte Tisochrysis lutea. Algal Research, 20, 229-248. Publisher's official version
  • Le Chevanton, M., Garnier, M., Lukomska, E., Schreiber, N., Cadoret, J.P., Saint-Jean, B. and Bougaran, G. (2016). Effects of nitrogen limitation on Dunaliella sp.–Alteromonas sp. interactions: from mutualistic to competitive relationships.. Front. Mar. Sci.3:123. Publisher's official version
  • Thiriet-Rupert, S., Carrier, G., Chenais, B., Trottier, C., Bougaran, G., Cadoret, J.P., Schoefs, B., Saint-Jean, B. (2016). Transcription factors in microalgae: genome-wide prediction and comparative analysis. Bmc Genomics, 17(282), 1-16. Publisher's official version / Open Access version
  • Rumin, J., (2016). Amélioration non OGM des performances de microalgues. PhD Thesis, Université Nantes Angers Le Mans.
2015
  • Rumin, J., Bonnefond, H., Saint-Jean, B., Rouxel, C., Sciandra, A., Bernard, O., Cadoret, J.P., Bougaran, G. (2015). The use of fluorescent Nile red and BODIPY for lipid measurement in microalgae. Biotechnology For Biofuels, 8(42), 1-16. Publisher's official version / Open Access version
  • Juin, C., Bonnet, A., Nicolau, E., Bérard, J.B., Devillers, R., Thiéry, V., Cadoret, J.P. and Picot, L. (2015) UPLC-MSE Profiling of Phytoplankton Metabolites: Application to the Identification of Pigments and Structural Analysis of Metabolites in Porphyridium purpureum. Mar. Drugs, 13(4), 2541-2558. Publisher's official version
  • Da Costa, F., Petton, B., Mingant, Chr., Bougaran, G., Rouxel, C., Quere, Cl., Wikfors, G.H., Soudant, Ph. and Robert, R. (2015). Influence of one selected Tisochrysis lutea strain rich in lipids on Crassostrea gigas larval development and biochemical composition.  Aquaculture Nutrition. Publisher's official version
  • Charrier, A., Bérard, J.B., Bougaran, G., Carrier, G., Lukomska, E., Schreiber, N., Fournier, F., Charrier, A.F., Rouxel, C., Garnier, M., Cadoret, J.P. and Saint-Jean, B. (2015). High-affinity nitrate/nitrite transporter genes (Nrt2) in Tisochrysis lutea: identification and expression analyses reveal some interesting specificities of Haptophytamicroalgae. Physiol. Plant. Publisher's official version
2014
  • Bougaran, G. (2014). La co-limitation par l'azote et le phosphore : étude des mécanismes chez la microalgue Tisochrysis lutea. PhD Thesis, Université de Nantes. Ecole doctorale VENAM. Open Access version
  • Moustafa Yasser, T.A., Bougaran, G., Callier, M., Blancheton, J.P. (2014). Bio-physiological response of biofilter algal candidate Ulva sp. to different nitrogen forms and fluxes. International journal of plant physiology and biochemistry, 6(7), 71-79. Publisher's official version / Open Access version
  • Juin, C., Chérouvrier, J.R., Thiéry, V., Gagez, A. L., Bérard, J.B., Joguet, N., Kaas, R., Cadoret, J.P., Picot, L. (2014). Microwave-Assisted Extraction of Phycobiliproteins from Porphyridium purpureum. Appl Biochem Biotechnol. Publisher's official version
  • Muñoz-Tamayo, R., Martinon, P., Bougaran, G., Mairet, F., Bernard, O. (2014). Getting the most out of it: Optimal experiments for parameter estimation of microalgae growth models. Journal of Process Control. 2014 June, 24(6), 991–1001. Publisher's official version
  • Garnier, M., Carrier, G., Rogniaux, H., Nicolau, E., Bougaran, G., Saint-Jean, B., Cadoret, J.P. (2014). Comparative proteomics reveals proteins impacted by nitrogen deprivation in wild-type and high lipid-accumulating mutant strains of Tisochrysis lutea. Journal of proteomics. 2014 Feb 27. Publisher's official version
  • Carrier, G., Garnier, M., Le Cunff, L., Bougaran, G., Probert, I., De Vargas, C., Corre, E., Cadoret, J.P. and Saint-Jean, B. (2014).Comparative Transcriptome of Wild Type and Selected Strains of the Microalgae Tisochrysis lutea Provides Insights into the Genetic Basis, Lipid Metabolism and the Life Cycle.  PLoS One.2014 Jan 29, 9(1). Publisher's official version
  • Juin, C., Thiery, V., Cadoret, J.P., Picot, L. (2013). Towards the Clinical Use of Phytoplankton Carotenoid Pigments to Cure Cancer. Oceanography 1: e105. Publisher's official version
  • Montagne, X., Porot, P., Aymard, C., Querleu, C., Bouter, A., Lorne, D., Cadoret, J.P., Lombaert-Valot, I., Petillon, O. (2013). Algogroup: Towards a Shared Vision of the Possible Deployment of Algae to Biofuels. Oil & Gas Science And Technology – Rev. Ifp Energies Nouvelles, 1-24. Publisher's official version
  • Baudelet, P.H., Gagez, A.L., Berard, J.B., Juin, C., Bridiau, N., Kaas, R., Thiery, V., Cadoret, J.P., Picot, L. (2013).  Antiproliferative Activity of Cyanophora paradoxa Pigments in Melanoma, Breast and Lung Cancer Cells. Mar. Drugs, 11(11), 4390-4406. Publisher's official version
  • Marchetti, J., Bougaran, G., Jauffrais, T., Lefebvre, S., Rouxel, C., Saint-Jean, B., Lukomska, E., Robert, R., Cadoret, J.P. (2013). Effects of blue light on the biochemical composition and photosynthetic activity of Isochrysis sp. (T-iso). Journal Of Applied Phycology, 25(1), 109-119. Publisher's official version
  • Le Chevanton, M., Garnier,  M., Bougaran, G., Schreiber, N., Lukomska, E., Bérard, J.B., Fouilland, E., Bernard, O., Cadoret J.P., (2013). Screening and selection of growth-promoting bacteria for Dunaliella cultures. Algal Research 2 (2013) 212-222. Publisher's official version
2012
  • Gagez, A.L., Valerie Thiery, V., Pasquet, V, Cadoret, J.P. & Picot, L., (2012). Epoxycarotenoids and Cancer. Review. Current Bioactive Compounds8(2): 109-141. Publisher's official version
  • Minouni, V., Ulmann, L., Pasquet, V., Mathieu, M., Picot, L., Bougaran, G., Cadoret, J.P., Morant-Manceau, A. & Schoefs, B., (2012). The Potential of Microalgae for the Production of Bioactive Molecules of Pharmaceutical Interest. Current Pharmaceutical Biotechnology, 13(15), 2733-2750. Open Access version
  • Serive, B., Kaas, R., Bérard, J.B., Pasquet, V., Picot, L. & Cadoret, J.P. (2012). Selection and optimisation of a method for efficient metabolites extraction from microalgae. Bioresource Technology, 124, 311–320. PDF
  • Jauffrais, T., Kilcoyne, J., Séchet, V., Herrenknecht, C., Truquet, P., Hervé, F., Bérard, J.B., Nulty, C., Taylor, S., Tillmann, U., Miles, C.O. & Hess, P. (2012). Production and Isolation of Azaspiracid-1 and -2 from Azadinium spinosum Culture in Pilot Scale Photobioreactors. Marine Drugs, 10(6), 1360-1382. PDF
  • Vasseur, Ch.,  Bougaran, G., Garnier, M., Hamelin, J., Leboulanger, Ch., Le Chevanton, M., Mostajir, B., Sialve, B., Steyer, J.Ph. & Fouilland, E. (2012). Carbon conversion efficiency and population dynamics of a marine algae-bacteria consortium growing on simplified synthetic digestate: First step in a bioprocess coupling algal production and anaerobic digestion. Bioresource technology 119, 79-87. PDF
  • Bougaran, B., Rouxel, C., Dubois, N., Kaas, R., Grouas, S., Lukomska, E., Le Coz, J.R. & Cadoret, J.P. (2012). Enhancement of Neutral Lipid Productivity in the Microalga Isochrysis Affinis Galbana (T-Iso) by a Mutation-Selection Procedure. Biotechnology and Bioengineering. 2012 Nov;109(11):2737-45.  Publisher's official version
  • Marchetti, J., Bougaran, G., Le Dean, L., Mégrier, C., Lukomska, E., Kaas, R., Olivo, E., Baron, R., Robert, R. & Cadoret, J.P. (2012). Optimizing conditions for the continuous culture of Isochrysis affinis galbana relevant to commercial hatcheries. Aquaculture, 326-329(0), 106-115. PDF
2011
  • Bendif, E.M., Probert, I., Hervé, A., Billard, C., Goux, D., Lelong, C., Cadoret, J.P. & Véron, B. (2011). Integrative Taxonomy of the Pavlovophyceae (Haptophyta): A reassessment. Protist, 162(5), 738-61. PDF 
  • Buffet, P.E., Tankoua, O.F., Pan, J.F., Berhanu, D., Herrenknecht, C., Poirier, L., Amiard-Triquet, C., Amiard, J.C., Berard, J.B., Risso, C., Guibbolini, M., Roméo, M., Reip, P., Valsami-Jones, E. & Mouneyrac, C. (2011). Behavioural and biochemical responses of two marine invertebrates Scrobicularia plana and Hediste diversicolor to copper oxide nanoparticles. Chemosphere, 84(1),166-74. PDF
  • Pasquet, V., Morisset, P., Ihammouine, S., Chepied, A., Aumailley, L., Berard, J.B., Serive, B., Kaas, R., Lanneluc, I., Thiery, V., Lafferriere, M., Piot, J.M., Patrice, T., Cadoret, J.P. & Picot, L. (2011). Antiproliferative activity of violaxanthin isolated from bioguided fractionation of Dunaliella Tertiolecta extracts. Mar. Drugs, 9(5), 819-831. PDF
  • Baïet, B., Burel, C., Saint-Jean, B., Louvet, R., Menu-Bouaouiche, L., Kiefer-Meyer, M.C., Mathieu-Rivet, E., Lefebvre, T., Castel, H., Carlier, A., Cadoret, J.P., Lerouge, P. & Bardor, M. (2011). N-Glycans of Phaeodactylum tricornutum diatom and functional characterization of its N-Acetylglucosaminyltransferase I enzyme. Journal of Biological Chemistry, 286(8), 6152-6164. PDF
  • Pasquet, V., Chérouvrier, J.R., Farhat, F., Thiéry, V., Piot, J.M., Berard, J.B., Kaas, R., Serive, B., Patrice, T., Cadoret, J.P. & Picot, L. (2011). Study on the microalgal pigments extraction process: Performance of microwave assisted extraction. Process Biochemistry, 46, 59–67. PDF
2010
  • Baron, R., Vauchel, P., Kaas, R., Arhaliass, A. & Legrand, J. (2010). Dynamical modelling of a reactive extrusion process: Focus on residence time distribution in a fully intermeshing co-rotating twin-screw extruder and application to an alginate extraction process. Chemical Engineering Science, 65(10), 3313-3321. PDF
  • Maheswari, U., Jabbari, K., Petit, J.L., Porcel, B.M., Allen, A.E, Cadoret, J.P., De Martino, A., Heijde, M., Kaas, R., La roche, J., Lopez, P.J., Martin-Jezequel, V., Meichenin, A., Mock, T., Schnitzler Parker, M., Vardi, A., Armbrust, E.V., Weissenbach, J., Katinka, M. & Bowler, Ch. (2010). Digital expression profiling of novel diatom transcripts provides insight into their biological functions. Genome biology, 11(8), R85. PDF
  • Bougaran, G., Bernard, O. & Sciandra, A. (2010). Modeling continuous cultures of microalgae colimited by nitrogen and phosphorus.Journal of Theoretical Biology, 265, 443–454. PDF
2009
  • Henriquez, V., Gimpel, J., Escobar, C., Gutierrez, C., Cadoret, J.P., Marshall, S. (2009). Identification of microalgal chloroplast sequences: genetic tools to develop microalgal heterologous expression systems for aquaculture applications. New Biotechnology 01/2009; 25.  Publisher's official version
  • Loubière, K., Olivo, E., Bougaran, G., Pruvost, J., Robert, R. & Legrand, J. (2009). A new photobioreactor for continuous microalgal production in hatcheries based on external-loop airlift and swirling flow. Biotechnology and Bioengineering, 102(1), 132-147. PDF
  • Vauchel, P., Leroux, K., Kaas, R., Arhaliass, A., Baron, R. & Legrand, J. (2009). Kinetics modeling of alginate alkaline extraction from Laminaria digitata. Bioresource Technology, 100(3), 1291-1296. PDF
2008
  • Bowler, Ch., Allen, A. E., Badger, J. H., Grimwood, J., Jabbari, K., Kuo, A., Devi U., Martens, C., Maumus, F., Otillar, R. P., Rayko, E., Salamov, A., Vandepoele, K., Beszteri, B., Gruber, A., Heijde, M., Katinka, M., Mock, T., Valentin, K., Verret, F., Berges, J. A., Brownlee, C., Cadoret, J.P., Chiovitti, A., Choi, C. J., Coesel, S., De Martino , A., Detter, J. Ch., Durkin, C., Falciatore, A., Fournet, J., Haruta, M., Huysman, M. J. J,, Jenkins, B. D., Jiroutova, K., Jorgensen, R. E., Joubert, Y., Kaplan, A., Kröger, N., Kroth, P. G., La Roche , J., Lindquist, E., Lommer, M., Martin–Jézéquel, V., Lopez, P. J., Lucas, S., Mangogna, M., McGinnis, K., Medlin, L. K., Montsant, A., Oudot–Le Secq , M., Napoli, C., Obornik, M., Schnitzler Parker , M., Petit, J., Porcel, B. M., Poulsen, N., Robison, M., Rychlewski, L., Rynearson, T. A., Schmutz, J., Shapiro, H., Siaut, M., Stanley, M., Sussman, M. R., Taylor, A. R., Vardi, A., von Dassow , P., Vyverman, W., Willis, A., Wyrwicz, L. S., Rokhsar, D. S., Weissenbach, J., Armbrust, E. V., Green, B. R., Van de Peer, Y. & Grigoriev, I. V. (2008). The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature, 456, 239-244. PDF
  • Vauchel, P., Kaas, R., Arhaliass, A., Baron, R. & Legrand, J. (2008). A new process for extracting alginates from Laminaria digitata: Reactive extrusion. Food and Bioprocess Technology, 1(3), 297-300. PDF
  • Cadoret, J.P. & Bernard, O. (2008). La production de biocarburant lipidique avec des microalgues: Promesses et défis. Journal de la Société de Biologie, 202 (3), 201-211. PDF
  • Cadoret, J.P., Bardor, M., Lerouge, P., Cabigliera, M., Henriquez, V. & Carlier, A. (2008). Producing recombinant commercial proteins. Médecine/Science, 24, 375-382. PDF, supplément
  • Vauchel, P., Arhaliass, A., Legrand, J., Kaas, R. & Baron, R. (2008). Decrease in dynamic viscosity and average molecular weight of alginate from Laminaria digitata during alkaline extraction. Journal of Phycology, 44(2), 515–517. PDF
2007
  • Richert, L., Golubic, S., Le Guedes, R., Herve, A. & Payri, C. (2007). Cyanobacterial populations that build 'kopara' microbial mats in Rangiroa, Tuamotu Archipelago, French Polynesia. European Journal of Phycology, 41(3), 259-279. PDF
2006
  • Moreau, D., Tomasoni, C., Jacquot, C., Kaas, R., Le Guedes, R., Cadoret, J.P., Muller-Feuga, A., Kontiza, L., Vagias, C., Roussis, V. & Roussakis, C. (2006). Cultivated microalgae and the carotenoid fucoxanthin from Odontella aurita as potent anti proliferative agents in bronchopulmonary and epithelial cell lines. Environmental Toxicology And Pharmacology, 22(1), 97 103. PDF 
2005
  • Richert, L., Golubic, S., Le Guedes, R., Ratiskol, J., Payri, C. & Guezennec, J. (2005). Characterization of exopolysaccharides produced by cyanobacteria isolated from polynesian microbial mats. Current Microbiology, 51(6), 379-384. PDF
  • Givernaud, Th., Scali, N., Barbaroux, O., Orbi, A., Selmaoui, Y., Rezzoum, N., Mouradi, A. & Kaas, R. (2005). Mapping and estimation of biomass of an harvested population of Gelidium sesquipedale along the Atlantic coast of Morocco. Phycologia, 44(1), 66-71. PDF 
2004
  • Muller-Feuga, A., Le Guedes, R. & Le Déan, L. (2004). Cell weight kinetics simulation in chemostat and batch culture of the rhodophyte Porphyridium cruentum. Biotech. Bioeng., 82(6), 759-766. PDF
  • Pruvost, J., Legrand, J., Legentilhomme, P. & Muller-Feuga, A. (2004). Effect of inlet type on shear stress and mixing in an annular photobioreactor involving a swirling decaying flow. Can. J. Chem. Eng., 82(3), 495-503. PDF
  • Robert, R., Chretiennot-Dinet, MJ., Kaas, R., Martin-Jezequel, V., Moal, J., Le Coz, JR., Nicolas, J.L., Bernard, E., Connan, J.P., Le Dean, L., Le Gourrierec, G., Leroy, B. & Quere, C. (2004). Improvement of phytoplankton culture in mollusc hatcheries: Characterisation of microalgae used as aquaculture feeds. Ifremer, Plouzané (France). 145 pp. PDF 
2003
  • Bougaran, G., Le Dean, L., Lukomska, E., Kaas, R. & Baron, R. (2003). Transient initial phase in continuous culture of Isochrysis galbana affinis Tahiti. Aquat Living Resour, 16(4), 389-394. PDF
  • Muller-Feuga, A., Le Guedes, R. & Pruvost, J. (2003). Benefits and limitations of modeling for optimization of Porphyridium cruentum cultures in an annular photobioreactor. J. Biotechnol., 2(103), 153-163. PDF 
  • Muller-Feuga, A., Le Guedes, R., Le Dean, L., Pruvost, J., Legentilhomme, P. & Legrand, J. (2003). Swirling flow implementation in a photobioreactor for batch and continuous cultures of Porphyridium cruentum. Biotechn. Bioeng., 85(5), 544-551. PDF
2002
  • Pruvost, J., Legrand, J., Legentilhomme, P. & Muller-Feuga, A. (2002). Simulation of Microalgae Growth in Limiting Light Conditions: Flow Effect. AIChE Journal, 5(48), 1109-1120. PDF
2000
  • Crepineau, F., Roscoe, T., Kaas, R., Kloareg, B. & Boyen, C. (2000). Characterisation of complementary DNAs from the expressed sequence tag analysis of life cycle stages of Laminaria digitata (Phaeophyceae). Plant Molecular Biology, 43(4), 503-513. PDF